PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006742.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 686aa    MW: 78916.7 Da    PI: 8.632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006742.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.43.9e-26796190
                            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80
                                    kfYn+Y++++GFs+rk++ +++k++g+ ++r fvCskeg re +k++ + +++traetr++C+a++ +k++k +gk+ v++
  FANhyb_rscf00006742.1.g00001.1  7 KFYNRYGRSAGFSIRKHTYYRNKKSGKLISRIFVCSKEGLREADKRH-HLTKNTRAETRISCDARMSIKLDKsSGKYIVYQ 86
                                    6*******************************************999.99*********************99******** PP

                            FAR1 81 leleHnHela 90
                                    +e+ H+H+l+
  FANhyb_rscf00006742.1.g00001.1 87 FEETHSHDLV 96
                                    ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-22796IPR004330FAR1 DNA binding domain
PfamPF105513.0E-32218312IPR018289MULE transposase domain
PROSITE profilePS5096610.126500533IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-6503529IPR007527Zinc finger, SWIM-type
SMARTSM005756.0E-6508536IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
SEQSAYKFYN RYGRSAGFSI RKHTYYRNKK SGKLISRIFV CSKEGLREAD KRHHLTKNTR  60
AETRISCDAR MSIKLDKSSG KYIVYQFEET HSHDLVTQEC AYMLPSQRNV TPPQGAEMVL  120
VKDSGVPLKL AFELMSREVG GRESLGFTRQ DHKNYLQSQR QKKLAYGEAG CLLKYFQNQA  180
LENPSFFYAV QLDSDEQITN IFWADARMIV DYGLFGDVVS FDTTYKTNEA NRPFGVFVGF  240
NHHRETVIFG AALMYDETSD SFTWLFETFL EAMSNKAPKS IFTDQDAAMA KACANVMPNT  300
YHMLCTWHIM NNAIKNASSI FKGDDQVTAF LSTCMKSYEE EDEFLHAWEE MLNTYNAHGN  360
PWLSSIFRLK EKWAKPYVKW AWSAGMHNTQ LSESFNASLK PYVKSDYDVV EFFKHFDRLL  420
NDKRYKELEA EYALCYKLPT VAIFTSMVIK AGNTYTKAIF DEFQIQYEKS LDYNLVGCIQ  480
DGDDIVFKVA FNGHPKERCV RVKRDNTVSC SCRLFEIEGI LCRHAIKILT NYMNVKEIPD  540
QYVLKRWTRK ARSESVKDMH GCDIQVDTNL QQTSWYKSLS SISTKISSRA AEREETYKFA  600
VHQLGELSKA IEGMLCAKMD ALQLGKDDQV TPSTIVNDTN VACHSNKGKV IQAKGFKKRD  660
SARGRKRRII GDFEKKHGQV SEREVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351321.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-113FAR1-related sequence 5